Jeliazkov, Jeliazko R: search on Z-Library

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1

Repertoire Analysis of Antibody CDR-H3 Loops Suggests Affinity Maturation Does Not Typically Result in Rigidification

Jeliazkov, Jeliazko R., Sljoka, Adnan, Kuroda, Daisuke, Tsuchimura, Nobuyuki, Katoh, Naoki, Tsumoto, Kouhei, Gray, Jeffrey J.

Journal:

Frontiers in Immunology

Year:

2018

Language:

english

File:

PDF, 4.85 MB

english, 2018

2

Toward the computational design of protein crystals with improved resolution

Jeliazkov, Jeliazko R., Robinson, Aaron C., GarcÃa-Moreno E., Bertrand, Berger, James M., Gray, Jeffrey J.

Journal:

Acta Crystallographica Section D Structural Biology

Year:

2019

File:

PDF, 1.83 MB

2019

3

The Rosetta all-atom energy function for macromolecular modeling and design

Alford, Rebecca Faye, Leaver-Fay, Andrew, Jeliazkov, Jeliazko R., O'Meara, Matthew J, DiMaio, Frank P., Park, Hahnbeom, Shapovalov, Maxim V, Renfrew, P. Douglas, Mulligan, Vikram Khipple, Kappel, Kall

Journal:

Journal of Chemical Theory and Computation

Year:

2017

Language:

english

File:

PDF, 5.39 MB

english, 2017

4

Novel sampling strategies and a coarse‐grained score function for docking homomers, flexible heteromers, and oligosaccharides using Rosetta in CAPRI Rounds 37‐45

Roy Burman, Shourya S., Nance, Morgan L., Jeliazkov, Jeliazko R., Labonte, Jason W., Lubin, Joseph H., Biswas, Naireeta, Gray, Jeffrey J.

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2019

Language:

english

File:

PDF, 644 KB

english, 2019

5

Modeling oblong proteins and water-mediated interfaces with RosettaDock in CAPRI rounds 28-35

Marze, Nicholas A., Jeliazkov, Jeliazko R., Roy Burman, Shourya Sonkar, Boyken, Scott E., DiMaio, Frank, Gray, Jeffrey J.

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2016

Language:

english

File:

PDF, 1.09 MB

english, 2016

6

Non-H3 CDR template selection in antibody modeling through machine learning

Long, Xiyao, Jeliazkov, Jeliazko R., Gray, Jeffrey J.

Journal:

Year:

2019

Language:

english

File:

PDF, 1.73 MB

english, 2019

7

A Deep-Dive into the Rosetta Energy Function for Biological Macromolecules

Alford, Rebecca F., Leaver-Fay, Andrew, Jeliazkov, Jeliazko R., Pacella, Michael S., Kuhlman, Brian, Kortemme, Tanja, Gray, Jeffrey J.

Journal:

Biophysical Journal

Year:

2017

Language:

english

File:

PDF, 42 KB

english, 2017

8

Caulobacter crescentus Hfq structure reveals a conserved mechanism of RNA annealing regulation

Santiago-Frangos, Andrew, Fröhlich, Kathrin S., Jeliazkov, Jeliazko R., Małecka, Ewelina M., Marino, Giada, Gray, Jeffrey J., Luisi, Ben F., Woodson, Sarah A., Hardwick, Steven W.

Journal:

Proceedings of the National Academy of Sciences

Year:

2019

Language:

english

File:

PDF, 1.95 MB

english, 2019

9

Modeling and docking of antibody structures with Rosetta

Weitzner, Brian D, Jeliazkov, Jeliazko R, Lyskov, Sergey, Marze, Nicholas, Kuroda, Daisuke, Frick, Rahel, Adolf-Bryfogle, Jared, Biswas, Naireeta, Dunbrack, Roland L, Gray, Jeffrey J

Journal:

Nature Protocols

Year:

2017

Language:

english

File:

PDF, 943 KB

english, 2017

10

Acidic C-terminal domains autoregulate the RNA chaperone Hfq

Santiago-Frangos, Andrew, Jeliazkov, Jeliazko R, Gray, Jeffrey J, Woodson, Sarah A

Journal:

Year:

2017

Language:

english

File:

PDF, 3.40 MB

english, 2017

11

Evolution of CDR H3 Flexibility at an Immunomic Scale

Jeliazkov, Jeliazko R., Slojka, Adnan, Kuroda, Daisuke, Tsutchimura, Nobuyuki, Tsumoto, Kouhei, Katoh, Naoki, Gray, Jeffrey J.

Journal:

Biophysical Journal

Year:

2018

Language:

english

File:

PDF, 66 KB

english, 2018

12

Computational Design of High-Resolution Protein Crystals

Jeliazkov, Jeliazko R., Robinson, Aaron C., Berger, James M., García-Moreno E., Bertrand, Gray, Jeffrey J.

Journal:

Biophysical Journal

Year:

2018

Language:

english

File:

PDF, 40 KB

english, 2018

13

and

Colla, Eugene V., Jeliazkov, Jeliazko R., Weissman, M. B., Viehland, D. D., Ye, Zuo-Gang

Journal:

Physical Review B

Year:

2014

Language:

english

File:

PDF, 1.14 MB

english, 2014

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